HL_8YOP_104
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8YOP|1|S2|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YOP_104 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1229
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8YOP|1|S2|G|1054
8YOP|1|S2|A|1055
8YOP|1|S2|U|1056
8YOP|1|S2|C|1057
8YOP|1|S2|A|1058
8YOP|1|S2|G|1059
8YOP|1|S2|A|1060
8YOP|1|S2|U|1061
8YOP|1|S2|A|1062
8YOP|1|S2|C|1063
8YOP|1|S2|C|1064
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SO
- 40S ribosomal protein S14
- Chain Sa
- 40S ribosomal protein S26
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