HL_8YOP_111

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8YOP|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_111 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1164

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8YOP|1|S2|G|1366
8YOP|1|S2|U|1367
8YOP|1|S2|U|1368
8YOP|1|S2|A|1369
8YOP|1|S2|A|1370
8YOP|1|S2|U|1371
8YOP|1|S2|U|1372
8YOP|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17