HL_8YOP_113

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_113 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.1902

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8YOP|1|S2|C|1460
8YOP|1|S2|G|1461
8YOP|1|S2|U|1462
8YOP|1|S2|U|1463
8YOP|1|S2|C|1464
8YOP|1|S2|A|1465
8YOP|1|S2|G|1466

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17