HL_8YOP_123
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCCCGAGCCGC
- Length
- 11 nucleotides
- Bulged bases
- 8YOP|1|S2|G|836, 8YOP|1|S2|G|838, 8YOP|1|S2|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YOP_123 not in the Motif Atlas
- Geometric match to HL_3EPH_001
- Geometric discrepancy: 0.3566
- The information below is about HL_3EPH_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YOP|1|S2|G|832
8YOP|1|S2|C|833
8YOP|1|S2|C|834
8YOP|1|S2|C|835
8YOP|1|S2|G|836
8YOP|1|S2|A|837
8YOP|1|S2|G|838
8YOP|1|S2|C|839
8YOP|1|S2|C|840
8YOP|1|S2|G|841
8YOP|1|S2|C|842
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: