HL_8YP6_001
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YP6_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.1654
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8YP6|1|a|U|16
8YP6|1|a|U|17
8YP6|1|a|U|18
8YP6|1|a|G|19
8YP6|1|a|A|20
8YP6|1|a|U|21
8YP6|1|a|C|22
8YP6|1|a|C|23
8YP6|1|a|U|24
8YP6|1|a|G|25
8YP6|1|a|G|26
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain e
- Small ribosomal subunit protein uS5
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: