HL_8YP6_015

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGUGGAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YP6_015 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.2193

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8YP6|1|a|C|669
8YP6|1|a|G|670
8YP6|1|a|G|671
8YP6|1|a|U|672
8YP6|1|a|G|673
8YP6|1|a|G|674
8YP6|1|a|A|675
8YP6|1|a|A|676
8YP6|1|a|U|677
8YP6|1|a|G|678

Current chains

Chain a

16S rRNA

Nearby chains

Chain k

Small ribosomal subunit protein uS11