HL_8YP6_017
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YP6_017 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.4531
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8YP6|1|a|G|766
8YP6|1|a|A|767
8YP6|1|a|U|768
8YP6|1|a|U|769
8YP6|1|a|A|770
8YP6|1|a|G|771
8YP6|1|a|A|772
8YP6|1|a|U|773
8YP6|1|a|A|774
8YP6|1|a|C|775
8YP6|1|a|C|776
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Methionine aminopeptidase
- Chain k
- Small ribosomal subunit protein uS11
Coloring options: