HL_8YP6_024

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8YP6|1|a|G|1074

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YP6_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1583

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8YP6|1|a|G|1069
8YP6|1|a|U|1070
8YP6|1|a|U|1071
8YP6|1|a|A|1072
8YP6|1|a|A|1073
8YP6|1|a|G|1074
8YP6|1|a|U|1075
8YP6|1|a|C|1076

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7