HL_8YUO_033
3D structure
- PDB id
- 8YUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- G(5MU)(PSU)CAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YUO_033 not in the Motif Atlas
- Homologous match to HL_7LYF_003
- Geometric discrepancy: 0.1265
- The information below is about HL_7LYF_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8YUO|1|V|G|53
8YUO|1|V|5MU|54
8YUO|1|V|PSU|55
8YUO|1|V|C|56
8YUO|1|V|A|57
8YUO|1|V|A|58
8YUO|1|V|G|59
8YUO|1|V|U|60
8YUO|1|V|C|61
Current chains
- Chain V
- A-site tRNAIle2
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L16
Coloring options: