HL_8YUO_042

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8YUO|1|a|A|196, 8YUO|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUO_042 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0705

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8YUO|1|a|G|194
8YUO|1|a|A|195
8YUO|1|a|A|196
8YUO|1|a|A|197
8YUO|1|a|C|198
8YUO|1|a|A|199
8YUO|1|a|U|200
8YUO|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28