HL_8YUO_062

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

8YUO|1|a|U|958, 8YUO|1|a|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUO_062 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1172

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8YUO|1|a|PSU|955
8YUO|1|a|G|956
8YUO|1|a|C|957
8YUO|1|a|U|958
8YUO|1|a|A|959
8YUO|1|a|A|960
8YUO|1|a|C|961
8YUO|1|a|G|962

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16