HL_8YUO_095

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUO_095 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8YUO|1|a|C|2594
8YUO|1|a|G|2595
8YUO|1|a|U|2596
8YUO|1|a|G|2597
8YUO|1|a|A|2598
8YUO|1|a|G|2599

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2