HL_8YUP_047

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8YUP|1|a|G|329, 8YUP|1|a|A|330, 8YUP|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUP_047 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0717

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8YUP|1|a|G|327
8YUP|1|a|U|328
8YUP|1|a|G|329
8YUP|1|a|A|330
8YUP|1|a|C|331
8YUP|1|a|A|332
8YUP|1|a|G|333
8YUP|1|a|C|334
8YUP|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24