HL_8YUQ_034
3D structure
- PDB id
- 8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.41 Å
Loop
- Sequence
- CAG(H2U)(H2U)GG(H2U)(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 8YUQ|1|X|H2U|16, 8YUQ|1|X|H2U|17, 8YUQ|1|X|G|18, 8YUQ|1|X|G|19, 8YUQ|1|X|H2U|20, 8YUQ|1|X|H2U|20|||A
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YUQ_034 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.1256
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YUQ|1|X|C|13
8YUQ|1|X|A|14
8YUQ|1|X|G|15
8YUQ|1|X|H2U|16
8YUQ|1|X|H2U|17
8YUQ|1|X|G|18
8YUQ|1|X|G|19
8YUQ|1|X|H2U|20
8YUQ|1|X|H2U|20|||A
8YUQ|1|X|A|21
8YUQ|1|X|G|22
Current chains
- Chain X
- A-site tRNAIle2
Nearby chains
- Chain V
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: