3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GAUAC
Length
5 nucleotides
Bulged bases
8YUQ|1|a|U|321, 8YUQ|1|a|A|322
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YUQ_046 not in the Motif Atlas
Geometric match to HL_5TBW_006
Geometric discrepancy: 0.0711
The information below is about HL_5TBW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

8YUQ|1|a|G|319
8YUQ|1|a|A|320
8YUQ|1|a|U|321
8YUQ|1|a|A|322
8YUQ|1|a|C|323

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.26 s
Application loaded.