HL_8YUQ_078

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8YUQ|1|a|A|1780, 8YUQ|1|a|U|1781, 8YUQ|1|a|U|1782, 8YUQ|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUQ_078 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0707

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8YUQ|1|a|U|1777
8YUQ|1|a|U|1778
8YUQ|1|a|U|1779
8YUQ|1|a|A|1780
8YUQ|1|a|U|1781
8YUQ|1|a|U|1782
8YUQ|1|a|A|1783
8YUQ|1|a|A|1784
8YUQ|1|a|A|1785
8YUQ|1|a|A|1786
8YUQ|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2