HL_8YUQ_086

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8YUQ|1|a|A|2268, 8YUQ|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUQ_086 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0569

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8YUQ|1|a|C|2264
8YUQ|1|a|U|2265
8YUQ|1|a|A|2266
8YUQ|1|a|A|2267
8YUQ|1|a|A|2268
8YUQ|1|a|G|2269
8YUQ|1|a|A|2270
8YUQ|1|a|G|2271
8YUQ|1|a|U|2272
8YUQ|1|a|A|2273
8YUQ|1|a|A|2274
8YUQ|1|a|C|2275
8YUQ|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27