3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
8YUQ|1|a|G|2751, 8YUQ|1|a|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YUQ_098 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.0551
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

8YUQ|1|a|C|2745
8YUQ|1|a|U|2746
8YUQ|1|a|G|2747
8YUQ|1|a|A|2748
8YUQ|1|a|A|2749
8YUQ|1|a|A|2750
8YUQ|1|a|G|2751
8YUQ|1|a|C|2752
8YUQ|1|a|A|2753
8YUQ|1|a|U|2754
8YUQ|1|a|C|2755
8YUQ|1|a|U|2756
8YUQ|1|a|A|2757
8YUQ|1|a|A|2758
8YUQ|1|a|G|2759

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6
Chain i
50S ribosomal protein L13

Coloring options:


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