HL_8YUR_042

3D structure

PDB id

8YUR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8YUR|1|a|A|196, 8YUR|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUR_042 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.08

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8YUR|1|a|G|194
8YUR|1|a|A|195
8YUR|1|a|A|196
8YUR|1|a|A|197
8YUR|1|a|C|198
8YUR|1|a|A|199
8YUR|1|a|U|200
8YUR|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28