HL_8YUS_061

3D structure

PDB id

8YUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUS_061 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.1907

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8YUS|1|a|C|885
8YUS|1|a|A|886
8YUS|1|a|U|887
8YUS|1|a|C|888
8YUS|1|a|C|889
8YUS|1|a|C|890
8YUS|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain M

30S ribosomal protein S13