HL_8Z70_009

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_009 not in the Motif Atlas

Homologous match to HL_8P9A_198

Geometric discrepancy: 0.1403

The information below is about HL_8P9A_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8Z70|1|2|U|368
8Z70|1|2|A|369
8Z70|1|2|A|370
8Z70|1|2|G|371
8Z70|1|2|G|372
8Z70|1|2|G|373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain SW

Small ribosomal subunit protein uS4A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sb

Small ribosomal subunit protein uS8A

Chain Sc

Small ribosomal subunit protein uS12A