HL_8Z70_018

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

8Z70|1|2|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_018 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5106

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8Z70|1|2|U|828
8Z70|1|2|A|829
8Z70|1|2|U|830
8Z70|1|2|U|831
8Z70|1|2|U|832
8Z70|1|2|U|833
8Z70|1|2|G|834
8Z70|1|2|U|835
8Z70|1|2|U|836
8Z70|1|2|G|837
8Z70|1|2|G|838
8Z70|1|2|U|839
8Z70|1|2|U|840
8Z70|1|2|U|841
8Z70|1|2|C|842
8Z70|1|2|U|843
8Z70|1|2|A|844

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain SX

Small ribosomal subunit protein uS17A