HL_8Z70_061
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 8Z70|1|A|A|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z70_061 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.3414
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8Z70|1|A|C|1239
8Z70|1|A|A|1240
8Z70|1|A|U|1241
8Z70|1|A|G|1242
8Z70|1|A|G|1243
8Z70|1|A|A|1244
8Z70|1|A|A|1245
8Z70|1|A|G|1246
8Z70|1|A|U|1247
8Z70|1|A|C|1248
8Z70|1|A|G|1249
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain s
- Transfer RNA; tRNA
Coloring options: