HL_8Z70_071

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_071 not in the Motif Atlas

Homologous match to HL_8P9A_149

Geometric discrepancy: 0.1243

The information below is about HL_8P9A_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97067.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8Z70|1|A|G|1719
8Z70|1|A|U|1720
8Z70|1|A|U|1721
8Z70|1|A|U|1722
8Z70|1|A|A|1723
8Z70|1|A|U|1724
8Z70|1|A|C|1725

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain r

Large ribosomal subunit protein eL43A