HL_8Z70_102

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8Z70|1|A|A|3243, 8Z70|1|A|A|3244, 8Z70|1|A|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_102 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.162

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8Z70|1|A|C|3240
8Z70|1|A|G|3241
8Z70|1|A|G|3242
8Z70|1|A|A|3243
8Z70|1|A|A|3244
8Z70|1|A|A|3245
8Z70|1|A|G|3246
8Z70|1|A|G|3247

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein uL13A