HL_8Z70_105
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z70_105 not in the Motif Atlas
- Geometric match to HL_8C3A_228
- Geometric discrepancy: 0.103
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8Z70|1|B|U|32
8Z70|1|B|U|33
8Z70|1|B|C|34
8Z70|1|B|C|35
8Z70|1|B|C|36
8Z70|1|B|G|37
8Z70|1|B|U|38
8Z70|1|B|C|39
8Z70|1|B|C|40
8Z70|1|B|G|41
8Z70|1|B|A|42
8Z70|1|B|U|43
8Z70|1|B|C|44
8Z70|1|B|A|45
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large ribosomal subunit protein uL18
- Chain M
- Large ribosomal subunit protein uL5B
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