HL_8Z70_115
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z70_115 not in the Motif Atlas
- Homologous match to HL_4WZD_238
- Geometric discrepancy: 0.127
- The information below is about HL_4WZD_238
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 46
Unit IDs
8Z70|1|t|G|31
8Z70|1|t|C|32
8Z70|1|t|U|33
8Z70|1|t|C|34
8Z70|1|t|A|35
8Z70|1|t|U|36
8Z70|1|t|A|37
8Z70|1|t|A|38
8Z70|1|t|C|39
Current chains
- Chain t
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SF
- Small ribosomal subunit protein uS9A
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