HL_8Z71_011
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCAAGG
- Length
- 6 nucleotides
- Bulged bases
- 8Z71|1|2|A|416
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z71_011 not in the Motif Atlas
- Homologous match to HL_8P9A_200
- Geometric discrepancy: 0.2427
- The information below is about HL_8P9A_200
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.3
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 62
Unit IDs
8Z71|1|2|C|414
8Z71|1|2|C|415
8Z71|1|2|A|416
8Z71|1|2|A|417
8Z71|1|2|G|418
8Z71|1|2|G|419
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain X
- Large ribosomal subunit protein uL14A
- Chain s
- Transfer RNA; tRNA
- Chain x
- Elongation factor 1-alpha 1
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