HL_8Z71_018

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

8Z71|1|2|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_018 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5106

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8Z71|1|2|U|828
8Z71|1|2|A|829
8Z71|1|2|U|830
8Z71|1|2|U|831
8Z71|1|2|U|832
8Z71|1|2|U|833
8Z71|1|2|G|834
8Z71|1|2|U|835
8Z71|1|2|U|836
8Z71|1|2|G|837
8Z71|1|2|G|838
8Z71|1|2|U|839
8Z71|1|2|U|840
8Z71|1|2|U|841
8Z71|1|2|C|842
8Z71|1|2|U|843
8Z71|1|2|A|844

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain SX

Small ribosomal subunit protein uS17A