HL_8Z71_025
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8Z71|1|2|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Z71_025 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1287
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8Z71|1|2|G|1188
8Z71|1|2|A|1189
8Z71|1|2|C|1190
8Z71|1|2|U|1191
8Z71|1|2|C|1192
8Z71|1|2|A|1193
8Z71|1|2|A|1194
8Z71|1|2|C|1195
8Z71|1|2|A|1196
8Z71|1|2|C|1197
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain s
- Transfer RNA; tRNA
- Chain t
- Transfer RNA; tRNA
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