HL_8Z71_028

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8Z71|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_028 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1379

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8Z71|1|2|C|1309
8Z71|1|2|U|1310
8Z71|1|2|U|1311
8Z71|1|2|A|1312
8Z71|1|2|A|1313
8Z71|1|2|U|1314
8Z71|1|2|U|1315
8Z71|1|2|G|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A