HL_8Z71_034

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

8Z71|1|2|C|1700

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_034 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3753

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8Z71|1|2|G|1698
8Z71|1|2|G|1699
8Z71|1|2|C|1700
8Z71|1|2|A|1701
8Z71|1|2|A|1702
8Z71|1|2|C|1703

Current chains

Chain 2

18S rRNA

Nearby chains