HL_8Z8U_004

3D structure

PDB id

8Z8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of LINE-1 ribozyme mutant - C39U

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z8U_004 not in the Motif Atlas

Geometric match to HL_3P22_001

Geometric discrepancy: 0.0748

The information below is about HL_3P22_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8Z8U|1|B|C|19||||10_554
8Z8U|1|B|G|20||||10_554
8Z8U|1|B|A|21||||10_554
8Z8U|1|B|A|22||||10_554
8Z8U|1|B|A|23||||10_554
8Z8U|1|B|G|24||||10_554

Current chains

Chain B

RNA (41-MER)

Nearby chains

Chain A

RNA (41-MER)