HL_8Z9K_004

3D structure

PDB id

8Z9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of LINE-1 ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z9K_004 not in the Motif Atlas

Geometric match to HL_3P22_001

Geometric discrepancy: 0.1671

The information below is about HL_3P22_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8Z9K|1|B|C|19||||10_554
8Z9K|1|B|G|20||||10_554
8Z9K|1|B|A|21||||10_554
8Z9K|1|B|A|22||||10_554
8Z9K|1|B|A|23||||10_554
8Z9K|1|B|G|24||||10_554

Current chains

Chain B

RNA (41-MER)

Nearby chains

Chain A

RNA (41-MER)