HL_8ZCZ_002

3D structure

PDB id

8ZCZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

8ZCZ|1|B|A|62, 8ZCZ|1|B|U|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZCZ_002 not in the Motif Atlas

Geometric match to HL_7EL1_002

Geometric discrepancy: 0.0602

The information below is about HL_7EL1_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

8ZCZ|1|B|C|59
8ZCZ|1|B|A|60
8ZCZ|1|B|A|61
8ZCZ|1|B|A|62
8ZCZ|1|B|A|63
8ZCZ|1|B|U|64
8ZCZ|1|B|G|65

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9