HL_8ZDB_012

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_012 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.1747

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8ZDB|1|2|A|569
8ZDB|1|2|C|570
8ZDB|1|2|U|571
8ZDB|1|2|U|572
8ZDB|1|2|U|573
8ZDB|1|2|A|574
8ZDB|1|2|A|575
8ZDB|1|2|A|576
8ZDB|1|2|U|577
8ZDB|1|2|C|578
8ZDB|1|2|C|579
8ZDB|1|2|U|580
8ZDB|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24