HL_8ZDB_025

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8ZDB|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_025 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1345

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8ZDB|1|2|G|1366
8ZDB|1|2|U|1367
8ZDB|1|2|U|1368
8ZDB|1|2|A|1369
8ZDB|1|2|A|1370
8ZDB|1|2|U|1371
8ZDB|1|2|U|1372
8ZDB|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS17