HL_8ZDC_002

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

8ZDC|1|2|G|74, 8ZDC|1|2|G|75, 8ZDC|1|2|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDC|1|2|C|69
8ZDC|1|2|G|70
8ZDC|1|2|G|71
8ZDC|1|2|C|72
8ZDC|1|2|C|73
8ZDC|1|2|G|74
8ZDC|1|2|G|75
8ZDC|1|2|U|76
8ZDC|1|2|A|77
8ZDC|1|2|C|78
8ZDC|1|2|A|79
8ZDC|1|2|G|80

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6