8ZDC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8ZDC_001 | 1/2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8ZDC_002 | 1/2/69:80 | No text annotation | ||
| HL_8ZDC_003 | 1/2/156:162 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_8ZDC_004 | 1/2/197:202 | GNRA | geometric HL_6AZ4_001 NA | |
| HL_8ZDC_005 | 1/2/288:295 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8ZDC_006 | 1/2/377:387 | No text annotation | ||
| HL_8ZDC_007 | 1/2/416:421 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_8ZDC_008 | 1/2/441:452 | No text annotation | homologous HL_8P9A_199 HL_86432.1 | |
| HL_8ZDC_009 | 1/2/462:467 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8ZDC_010 | 1/2/498:504 | No text annotation | homologous HL_8C3A_203 NA | |
| HL_8ZDC_011 | 1/2/539:544 | GNRA | geometric HL_6YMC_001 HL_34789.1 | |
| HL_8ZDC_012 | 1/2/569:581 | No text annotation | homologous HL_8P9A_203 HL_68749.1 | |
| HL_8ZDC_013 | 1/2/618:623 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8ZDC_014 | 1/2/820:828 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8ZDC_015 | 1/2/885:901 | No text annotation | ||
| HL_8ZDC_016 | 1/2/957:966 | No text annotation | homologous HL_8P9A_209 HL_38491.1 | |
| HL_8ZDC_017 | 1/2/994:999 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8ZDC_018 | 1/2/1054:1064 | No text annotation | homologous HL_8P9A_211 HL_38491.1 | |
| HL_8ZDC_019 | 1/2/1113:1120 | No text annotation | ||
| HL_8ZDC_020 | 1/2/1141:1146 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8ZDC_021 | 1/2/1178:1183 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8ZDC_022 | 1/2/1245:1254 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8ZDC_023 | 1/2/1295:1304 | GNRA wlth extra near cWW | homologous HL_8P9A_216 HL_45359.1 | |
| HL_8ZDC_024 | 1/2/1353:1358 | GNRA | homologous HL_8C3A_219 NA | |
| HL_8ZDC_025 | 1/2/1366:1373 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8ZDC_026 | 1/2/1460:1466 | No text annotation | homologous HL_8C3A_222 NA | |
| HL_8ZDC_027 | 1/2/1565:1570 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8ZDC_028 | 1/2/1614:1625 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8ZDC_029 | 1/2/1658:1666 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8ZDC_030 | 1/2/1847:1852 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8ZDC_001 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_8ZDC_002 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_8ZDC_003 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_8ZDC_004 | 1/2/41:47, 1/2/479:481 | No text annotation | homologous IL_8C3A_395 NA | |
| IL_8ZDC_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform | homologous IL_8P9A_377 IL_34520.1 | |
| IL_8ZDC_006 | 1/2/57:62, 1/2/86:88 | No text annotation | homologous IL_8P9A_378 IL_61299.5 | |
| IL_8ZDC_007 | 1/2/63:68, 1/2/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
| IL_8ZDC_008 | 1/2/108:110, 1/2/351:353 | Isolated non-canonical cWW pair | geometric IL_8C3A_037 NA | |
| IL_8ZDC_009 | 1/2/110:112, 1/2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.1 | |
| IL_8ZDC_010 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8ZDC_011 | 1/2/116:121, 1/2/343:347 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_8ZDC_012 | 1/2/123:124, 1/2/339:341 | Minor groove platform | geometric IL_4UYK_001 IL_34520.1 | |
| IL_8ZDC_013 | 1/2/145:151, 1/2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8ZDC_014 | 1/2/152:154, 1/2/164:166 | No text annotation | homologous IL_8P9A_384 IL_23751.1 | |
| IL_8ZDC_015 | 1/2/188:192, 1/2/207:211 | Double sheared with non-canonical cWW | geometric IL_7A0S_087 IL_87767.1 | |
| IL_8ZDC_016 | 1/2/216:219, 1/2/302:309 | No text annotation | ||
| IL_8ZDC_017 | 1/2/312:314, 1/2/336:337 | Single bulged A | homologous IL_8P9A_388 IL_14190.1 | |
| IL_8ZDC_018 | 1/2/317:319, 1/2/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_8ZDC_019 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8ZDC_020 | 1/2/366:371, 1/2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_8ZDC_021 | 1/2/411:413, 1/2/424:429 | No text annotation | homologous IL_8P9A_393 IL_93336.1 | |
| IL_8ZDC_022 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8ZDC_023 | 1/2/459:461, 1/2/468:470 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8ZDC_024 | 1/2/487:489, 1/2/511:512 | Single bulged U | homologous IL_8P9A_396 IL_97561.1 | |
| IL_8ZDC_025 | 1/2/491:495, 1/2/508:509 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8ZDC_026 | 1/2/495:496, 1/2/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.1 | |
| IL_8ZDC_027 | 1/2/529:530, 1/2/554:556 | Single bulged A | homologous IL_8P9A_399 IL_14190.1 | |
| IL_8ZDC_028 | 1/2/535:537, 1/2/546:549 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 NA | |
| IL_8ZDC_029 | 1/2/563:565, 1/2/585:592 | No text annotation | ||
| IL_8ZDC_030 | 1/2/566:569, 1/2/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
| IL_8ZDC_031 | 1/2/599:606, 1/2/636:637 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8ZDC_032 | 1/2/606:608, 1/2/635:636 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8ZDC_033 | 1/2/611:617, 1/2/624:632 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_8ZDC_034 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_8ZDC_035 | 1/2/665:671, 1/2/1161:1162 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8ZDC_036 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8ZDC_037 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8ZDC_038 | 1/2/747:750, 1/2/793:795 | No text annotation | geometric IL_8C3A_419 NA | |
| IL_8ZDC_039 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8ZDC_040 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
| IL_8ZDC_041 | 1/2/807:815, 1/2/849:856 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8ZDC_042 | 1/2/874:876, 1/2/910:912 | Isolated non-canonical cWW pair | geometric IL_4P3T_005 NA | |
| IL_8ZDC_043 | 1/2/877:879, 1/2/907:909 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_01003.1 | |
| IL_8ZDC_044 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_8P9A_417 IL_74641.1 | |
| IL_8ZDC_045 | 1/2/925:926, 1/2/1015:1017 | Single bulged U | geometric IL_6UFH_004 NA | |
| IL_8ZDC_046 | 1/2/928:931, 1/2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.1 | |
| IL_8ZDC_047 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8ZDC_048 | 1/2/943:945, 1/2/981:983 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.1 | |
| IL_8ZDC_049 | 1/2/952:956, 1/2/967:974 | Kink-turn | geometric IL_5J7L_035 NA | |
| IL_8ZDC_050 | 1/2/1042:1047, 1/2/1071:1073 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8ZDC_051 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8ZDC_052 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_8ZDC_053 | 1/2/1098:1101, 1/2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_8P9A_426 IL_15225.1 | |
| IL_8ZDC_054 | 1/2/1101:1103, 1/2/1129:1131 | Isolated cWH basepair | geometric IL_8C3A_413 NA | |
| IL_8ZDC_055 | 1/2/1108:1110, 1/2/1123:1124 | Minor groove platform | geometric IL_1U6B_007 IL_34520.1 | |
| IL_8ZDC_056 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8C3A_446 NA | |
| IL_8ZDC_057 | 1/2/1206:1208, 1/2/1691:1692 | Single bulged G | homologous IL_8P9A_430 IL_28408.1 | |
| IL_8ZDC_058 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8ZDC_059 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.1 | |
| IL_8ZDC_060 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8ZDC_061 | 1/2/1270:1272, 1/2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8ZDC_062 | 1/2/1282:1286, 1/2/1311:1315 | No text annotation | ||
| IL_8ZDC_063 | 1/2/1282:1290, 1/2/1309:1315 | No text annotation | ||
| IL_8ZDC_064 | 1/2/1286:1290, 1/2/1309:1311 | No text annotation | ||
| IL_8ZDC_065 | 1/2/1291:1293, 1/2/1306:1308 | No text annotation | homologous IL_8P9A_436 IL_38565.1 | |
| IL_8ZDC_066 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8ZDC_067 | 1/2/1329:1333, 1/2/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_8ZDC_068 | 1/2/1329:1335, 1/2/1492:1500 | No text annotation | geometric IL_4V88_510 NA | |
| IL_8ZDC_069 | 1/2/1333:1335, 1/2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_93811.1 | |
| IL_8ZDC_070 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8ZDC_071 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.1 | |
| IL_8ZDC_072 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.1 | |
| IL_8ZDC_073 | 1/2/1402:1405, 1/2/1441:1444 | No text annotation | homologous IL_8C3A_462 NA | |
| IL_8ZDC_074 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8ZDC_075 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.1 | |
| IL_8ZDC_076 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
| IL_8ZDC_077 | 1/2/1560:1562, 1/2/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_8ZDC_078 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_8ZDC_079 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8ZDC_080 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | ||
| IL_8ZDC_081 | 1/2/1714:1716, 1/2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8P9A_456 IL_01003.1 | |
| IL_8ZDC_082 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared | homologous IL_8C3A_475 NA | |
| IL_8ZDC_083 | 1/2/1720:1722, 1/2/1812:1813 | No text annotation | ||
| IL_8ZDC_084 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8ZDC_085 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | homologous IL_8P9A_460 IL_58355.1 | |
| IL_8ZDC_086 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
| IL_8ZDC_087 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_8ZDC_088 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation | ||
| IL_8ZDC_089 | 1/2/1751:1752, 1/2/1780:1782 | Single stack bend | geometric IL_5TBW_101 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8ZDC_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_8ZDC_002 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_8ZDC_003 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_8ZDC_004 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | ||
| J3_8ZDC_005 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8ZDC_006 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8ZDC_007 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8ZDC_008 | 1/2/1272:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8ZDC_009 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_8ZDC_010 | 1/2/1350:1351, 1/2/1360:1365, 1/2/1374:1379 | No text annotation | ||
| J3_8ZDC_011 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_8ZDC_012 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8ZDC_001 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8ZDC_002 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_8ZDC_001 | 1/2/30:34, 1/2/521:527, 1/2/558:563, 1/2/592:595, 1/2/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8ZDC_002 | 1/2/53:56, 1/2/89:96, 1/2/434:436, 1/2/457:459, 1/2/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8ZDC_003 | 1/2/125:130, 1/2/182:185, 1/2/214:215, 1/2/310:312, 1/2/337:338 | No text annotation |
Problematic loops
No problematic loops
Coloring options: