HL_8ZDC_004

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_004 not in the Motif Atlas

Geometric match to HL_6AZ4_001

Geometric discrepancy: 0.1904

The information below is about HL_6AZ4_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZDC|1|2|U|197
8ZDC|1|2|U|198
8ZDC|1|2|C|199
8ZDC|1|2|G|200
8ZDC|1|2|C|201
8ZDC|1|2|G|202

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8