HL_8ZDC_011

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_011 not in the Motif Atlas

Geometric match to HL_6YMC_001

Geometric discrepancy: 0.166

The information below is about HL_6YMC_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8ZDC|1|2|C|539
8ZDC|1|2|U|540
8ZDC|1|2|U|541
8ZDC|1|2|U|542
8ZDC|1|2|C|543
8ZDC|1|2|G|544

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain p

Serine/threonine-protein kinase RIO3