HL_8ZDC_015

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8ZDC|1|2|U|887, 8ZDC|1|2|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDC|1|2|U|885
8ZDC|1|2|A|886
8ZDC|1|2|U|887
8ZDC|1|2|U|888
8ZDC|1|2|U|889
8ZDC|1|2|U|890
8ZDC|1|2|G|891
8ZDC|1|2|U|892
8ZDC|1|2|U|893
8ZDC|1|2|G|894
8ZDC|1|2|G|895
8ZDC|1|2|U|896
8ZDC|1|2|U|897
8ZDC|1|2|U|898
8ZDC|1|2|U|899
8ZDC|1|2|C|900
8ZDC|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS17