HL_8ZDC_023

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8ZDC|1|2|U|1300, 8ZDC|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_023 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.3293

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8ZDC|1|2|A|1295
8ZDC|1|2|U|1296
8ZDC|1|2|U|1297
8ZDC|1|2|G|1298
8ZDC|1|2|A|1299
8ZDC|1|2|U|1300
8ZDC|1|2|A|1301
8ZDC|1|2|G|1302
8ZDC|1|2|C|1303
8ZDC|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14