HL_8ZDC_027

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_027 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.2714

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8ZDC|1|2|C|1565
8ZDC|1|2|G|1566
8ZDC|1|2|G|1567
8ZDC|1|2|C|1568
8ZDC|1|2|A|1569
8ZDC|1|2|G|1570

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19