HL_8ZDD_007

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDD_007 not in the Motif Atlas

Homologous match to HL_8P9A_198

Geometric discrepancy: 0.2162

The information below is about HL_8P9A_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8ZDD|1|2|U|416
8ZDD|1|2|C|417
8ZDD|1|2|A|418
8ZDD|1|2|G|419
8ZDD|1|2|G|420
8ZDD|1|2|G|421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8

Chain X

Small ribosomal subunit protein uS12