HL_8ZDD_027
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8ZDD|1|2|U|1621, 8ZDD|1|2|U|1622, 8ZDD|1|2|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZDD_027 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.1718
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8ZDD|1|2|A|1614
8ZDD|1|2|U|1615
8ZDD|1|2|U|1616
8ZDD|1|2|G|1617
8ZDD|1|2|C|1618
8ZDD|1|2|A|1619
8ZDD|1|2|A|1620
8ZDD|1|2|U|1621
8ZDD|1|2|U|1622
8ZDD|1|2|A|1623
8ZDD|1|2|U|1624
8ZDD|1|2|U|1625
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein uS19
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain d
- Small ribosomal subunit protein uS14
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