HL_8ZEJ_034

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

8ZEJ|1|X|U|16, 8ZEJ|1|X|U|17, 8ZEJ|1|X|G|18, 8ZEJ|1|X|G|19, 8ZEJ|1|X|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_034 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.1914

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8ZEJ|1|X|C|13
8ZEJ|1|X|A|14
8ZEJ|1|X|G|15
8ZEJ|1|X|U|16
8ZEJ|1|X|U|17
8ZEJ|1|X|G|18
8ZEJ|1|X|G|19
8ZEJ|1|X|U|20
8ZEJ|1|X|A|21
8ZEJ|1|X|G|22

Current chains

Chain X

E-site tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA