Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8ZEJ_0011/A/12:22No text annotation
geometric
HL_4LFB_001
HL_89881.5
HL_8ZEJ_0021/A/75:95No text annotation
HL_8ZEJ_0031/A/158:163GNRA
geometric
HL_8P9A_185
HL_37824.8
HL_8ZEJ_0041/A/186:191GNRA
geometric
HL_1U9S_004
HL_37824.8
HL_8ZEJ_0051/A/207:212No text annotation
HL_8ZEJ_0061/A/259:267GNRA related
geometric
HL_5J7L_006
HL_84299.4
HL_8ZEJ_0071/A/296:301GNRA
geometric
HL_5J7L_007
HL_37824.8
HL_8ZEJ_0081/A/320:333No text annotation
geometric
HL_4LFB_008
HL_81205.3
HL_8ZEJ_0091/A/342:347UNCG
geometric
HL_8P9A_154
HL_34617.5
HL_8ZEJ_0101/A/379:384GNRA
geometric
HL_4LFB_028
HL_37824.8
HL_8ZEJ_0111/A/419:424UNCG
geometric
HL_5LYS_002
HL_34617.5
HL_8ZEJ_0121/A/454:479No text annotation
HL_8ZEJ_0131/A/522:527GNRA variation
geometric
HL_5J7L_205
HL_37824.8
HL_8ZEJ_0141/A/617:623GNRA-like with tWH
geometric
HL_4LFB_014
HL_10453.3
HL_8ZEJ_0151/A/689:698No text annotation
geometric
HL_8CRE_210
HL_75293.5
HL_8ZEJ_0161/A/726:731GNRA
geometric
HL_8CRE_211
HL_37824.8
HL_8ZEJ_0171/A/786:796No text annotation
geometric
HL_5J7L_017
HL_75293.5
HL_8ZEJ_0181/A/840:846No text annotation
HL_8ZEJ_0191/A/862:867GNRA
geometric
HL_4LFB_019
HL_37824.8
HL_8ZEJ_0201/A/897:902GNRA
geometric
HL_4LFB_020
HL_37824.8
HL_8ZEJ_0211/A/963:972No text annotation
geometric
HL_4LFB_021
HL_50779.4
HL_8ZEJ_0221/A/1012:1017GNRA
geometric
HL_4Y1M_004
HL_37824.8
HL_8ZEJ_0231/A/1028:1033No text annotation
HL_8ZEJ_0241/A/1076:1081GNRA
geometric
HL_5J7L_027
HL_37824.8
HL_8ZEJ_0251/A/1089:1096No text annotation
HL_8ZEJ_0261/A/1132:1142No text annotation
HL_8ZEJ_0271/A/1134:1141No text annotation
HL_8ZEJ_0281/A/1165:1171GNRA
geometric
HL_4WF9_071
HL_37824.8
HL_8ZEJ_0291/A/1265:1270GNRA
geometric
HL_4YAZ_003
HL_37824.8
HL_8ZEJ_0301/A/1314:1323T-loop with 3 stacked bulged bases
geometric
HL_5J7L_028
HL_02887.3
HL_8ZEJ_0311/A/1356:1366No text annotation
geometric
HL_4LFB_030
HL_06226.4
HL_8ZEJ_0321/A/1449:1454UNCG
geometric
HL_6QN3_003
HL_34617.5
HL_8ZEJ_0331/A/1515:1520GNRA
geometric
HL_5J7L_031
HL_37824.8
HL_8ZEJ_0341/X/13:22tRNA D-loop
geometric
HL_6JXM_001
HL_20811.4
HL_8ZEJ_0351/X/28:42No text annotation
HL_8ZEJ_0361/X/53:61T-loop with 2 stacked bulged bases
geometric
HL_8K1E_002
HL_28252.9
HL_8ZEJ_0371/Y/13:23tRNA D-loop
geometric
HL_7LYF_001
HL_20811.4
HL_8ZEJ_0381/Y/32:40tRNA anticodon loop
geometric
HL_6UFG_007
HL_06059.7
HL_8ZEJ_0391/Y/54:62T-loop with 2 stacked bulged bases
geometric
HL_1J1U_003
HL_28252.9
HL_8ZEJ_0401/Z/13:23tRNA D-loop
geometric
HL_4V90_032
HL_20811.4
HL_8ZEJ_0411/Z/32:40tRNA anticodon loop
geometric
HL_4LNT_144
HL_06059.7
HL_8ZEJ_0421/Z/54:62T-loop with 2 stacked bulged bases
geometric
HL_5WT1_003
HL_28252.9
HL_8ZEJ_0431/a/38:44No text annotation
geometric
HL_5J7L_203
HL_47787.2
HL_8ZEJ_0441/a/86:90Mini UNCG
geometric
HL_5J7L_204
HL_48778.2
HL_8ZEJ_0451/b/59:68No text annotation
HL_8ZEJ_0461/b/87:95No text annotation
geometric
HL_5J7L_135
HL_80241.1
HL_8ZEJ_0471/b/123:128No text annotation
geometric
HL_5J7L_136
HL_82710.2
HL_8ZEJ_0481/b/137:142UNCG
geometric
HL_7KKV_002
HL_34617.5
HL_8ZEJ_0491/b/158:168No text annotation
geometric
HL_5J7L_138
HL_68257.1
HL_8ZEJ_0501/b/194:201No text annotation
geometric
HL_8CRE_001
HL_30068.2
HL_8ZEJ_0511/b/225:230No text annotation
geometric
HL_5J7L_140
HL_62934.1
HL_8ZEJ_0521/b/246:252No text annotation
geometric
HL_5J7L_141
HL_37369.2
HL_8ZEJ_0531/b/305:312T-loop with 1 bulged base
geometric
HL_7A0S_010
HL_01609.3
HL_8ZEJ_0541/b/319:323No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_8ZEJ_0551/b/327:335T-loop with unstacked turn
geometric
HL_5J7L_144
HL_27670.2
HL_8ZEJ_0561/b/382:392No text annotation
geometric
HL_5J7L_145
HL_91503.7
HL_8ZEJ_0571/b/410:417Pseudoknot geometry
geometric
HL_7A0S_014
HL_30680.3
HL_8ZEJ_0581/b/462:467GNRA
geometric
HL_4WFL_003
HL_37824.8
HL_8ZEJ_0591/b/487:493GNRA
geometric
HL_5J7L_148
HL_37824.8
HL_8ZEJ_0601/b/544:549No text annotation
HL_8ZEJ_0611/b/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.9
HL_8ZEJ_0621/b/611:617No text annotation
HL_8ZEJ_0631/b/629:634GNRA
geometric
HL_5J7L_152
HL_37824.8
HL_8ZEJ_0641/b/641:647No text annotation
HL_8ZEJ_0651/b/712:719GNRA wlth tandem sheared
geometric
HL_5J7L_154
HL_81538.2
HL_8ZEJ_0661/b/744:753No text annotation
geometric
HL_7A0S_022
HL_88205.2
HL_8ZEJ_0671/b/779:785UNCG variation
geometric
HL_7A0S_023
HL_53890.2
HL_8ZEJ_0681/b/826:831No text annotation
geometric
HL_5J7L_157
HL_55195.3
HL_8ZEJ_0691/b/884:892No text annotation
HL_8ZEJ_0701/b/955:962GNRA
geometric
HL_7A0S_026
HL_37824.8
HL_8ZEJ_0711/b/978:985No text annotation
geometric
HL_4WF9_028
HL_42998.2
HL_8ZEJ_0721/b/1063:1076No text annotation
HL_8ZEJ_0731/b/1092:1099No text annotation
HL_8ZEJ_0741/b/1172:1177No text annotation
geometric
HL_4V9F_025
HL_87954.2
HL_8ZEJ_0751/b/1222:1227GNRA
geometric
HL_5J7L_164
HL_37824.8
HL_8ZEJ_0761/b/1281:1289T-loop with 2 stacked bulged bases
geometric
HL_8CRE_030
HL_28252.9
HL_8ZEJ_0771/b/1324:1330Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_166
HL_57176.2
HL_8ZEJ_0781/b/1363:1368GNRA
geometric
HL_5J7L_167
HL_37824.8
HL_8ZEJ_0791/b/1389:1398No text annotation
geometric
HL_5J7L_168
HL_81545.2
HL_8ZEJ_0801/b/1451:1459Mini UNCG with extended bulge
geometric
HL_5J7L_169
HL_22622.1
HL_8ZEJ_0811/b/1492:1498Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
HL_57176.2
HL_8ZEJ_0821/b/1531:1540No text annotation
HL_8ZEJ_0831/b/1565:1568Mini UNCG
geometric
HL_9DFE_037
HL_48778.2
HL_8ZEJ_0841/b/1612:1619No text annotation
geometric
HL_4WF9_038
HL_89567.2
HL_8ZEJ_0851/b/1630:1636GNRA
geometric
HL_5J7L_174
HL_37824.8
HL_8ZEJ_0861/b/1691:1696UNCG
geometric
HL_8P9A_154
HL_34617.5
HL_8ZEJ_0871/b/1728:1731Mini UNCG
geometric
HL_4L8H_001
HL_48778.2
HL_8ZEJ_0881/b/1752:1756No text annotation
geometric
HL_4V9F_046
HL_80709.3
HL_8ZEJ_0891/b/1777:1787No text annotation
geometric
HL_4WF9_043
HL_01962.2
HL_8ZEJ_0901/b/1806:1811GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_8ZEJ_0911/b/1868:1873GNRA
geometric
HL_8CRE_222
HL_37824.8
HL_8ZEJ_0921/b/1910:1920No text annotation
geometric
HL_8CRE_047
HL_25847.2
HL_8ZEJ_0931/b/1949:1957No text annotation
geometric
HL_5J7L_182
HL_20167.2
HL_8ZEJ_0941/b/2027:2036No text annotation
geometric
HL_4WF9_047
HL_61996.3
HL_8ZEJ_0951/b/2143:2148No text annotation
geometric
HL_9DFE_006
HL_53890.2
HL_8ZEJ_0961/b/2209:2215No text annotation
geometric
HL_5J7L_185
HL_49922.4
HL_8ZEJ_0971/b/2248:2256No text annotation
geometric
HL_7A0S_052
HL_85367.2
HL_8ZEJ_0981/b/2264:2276No text annotation
geometric
HL_5J7L_187
HL_91939.2
HL_8ZEJ_0991/b/2304:2312No text annotation
geometric
HL_5J7L_219
HL_50860.2
HL_8ZEJ_1001/b/2324:2331Pseudoknot geometry
geometric
HL_5J7L_189
HL_93324.4
HL_8ZEJ_1011/b/2356:2361GNRA
geometric
HL_5J7L_190
HL_37824.8
HL_8ZEJ_1021/b/2374:2379GNRA
geometric
HL_5J7L_191
HL_37824.8
HL_8ZEJ_1031/b/2404:2413No text annotation
geometric
HL_5J7L_192
HL_53454.2
HL_8ZEJ_1041/b/2471:2479No text annotation
geometric
HL_9DFE_058
HL_32735.2
HL_8ZEJ_1051/b/2528:2535GNRA variation
geometric
HL_5J7L_194
HL_31585.4
HL_8ZEJ_1061/b/2551:2557No text annotation
geometric
HL_4WF9_058
HL_30068.2
HL_8ZEJ_1071/b/2594:2599GNRA
geometric
HL_3IGI_003
HL_37824.8
HL_8ZEJ_1081/b/2658:2663GNRA
geometric
HL_8Z8U_001
HL_37824.8
HL_8ZEJ_1091/b/2701:2706Ribsomal LSU H95
geometric
HL_7A0S_064
HL_65794.5
HL_8ZEJ_1101/b/2745:2759No text annotation
geometric
HL_5J7L_199
HL_74055.2
HL_8ZEJ_1111/b/2796:2799No text annotation
geometric
HL_6LTU_001
HL_48778.2
HL_8ZEJ_1121/b/2819:2827No text annotation
geometric
HL_5J7L_201
HL_64690.6
HL_8ZEJ_1131/b/2856:2861GNRA
geometric
HL_7A0S_068
HL_37824.8

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8ZEJ_0011/A/30:34,
1/A/550:553
No text annotation
geometric
IL_8BH9_001
IL_51479.1
IL_8ZEJ_0021/A/44:45,
1/A/396:398
Single bulged A
geometric
IL_5J7L_002
IL_31462.7
IL_8ZEJ_0031/A/47:52,
1/A/359:361
No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_8ZEJ_0041/A/54:56,
1/A/356:357
Minor groove platform
geometric
IL_8CRE_394
IL_51454.3
IL_8ZEJ_0051/A/63:66,
1/A/103:104
Multiple bulged bases
geometric
IL_5J7L_005
IL_82107.5
IL_8ZEJ_0061/A/67:69,
1/A/99:102
Minor groove platform with extra cWW
geometric
IL_5J7L_006
IL_90351.1
IL_8ZEJ_0071/A/70:74,
1/A/96:98
No text annotation
IL_8ZEJ_0081/A/128:131,
1/A/231:233
No text annotation
IL_8ZEJ_0091/A/132:136,
1/A/227:230
No text annotation
geometric
IL_4LFB_008
IL_64231.5
IL_8ZEJ_0101/A/144:146,
1/A/176:178
Isolated cWH basepair
geometric
IL_4WF9_045
IL_10167.6
IL_8ZEJ_0111/A/147:153,
1/A/168:175
tWH-tWH-tHW-tHW
geometric
IL_5J7L_012
IL_80604.6
IL_8ZEJ_0121/A/202:206,
1/A/213:215
No text annotation
IL_8ZEJ_0131/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
IL_46174.3
IL_8ZEJ_0141/A/249:252,
1/A/274:275
No text annotation
geometric
IL_4LFB_012
IL_47074.2
IL_8ZEJ_0151/A/292:293,
1/A/304:308
C-loop
geometric
IL_4LFB_013
IL_03109.3
IL_8ZEJ_0161/A/367:369,
1/A/392:393
No text annotation
geometric
IL_8CRE_098
IL_89505.4
IL_8ZEJ_0171/A/370:377,
1/A/386:391
No text annotation
IL_8ZEJ_0181/A/409:416,
1/A/427:433
No text annotation
geometric
IL_4LFB_017
IL_28026.3
IL_8ZEJ_0191/A/440:442,
1/A/492:497
No text annotation
IL_8ZEJ_0201/A/446:454,
1/A/479:488
No text annotation
IL_8ZEJ_0211/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
geometric
IL_4LFB_020
IL_41203.4
IL_8ZEJ_0221/A/515:521,
1/A/528:536
Kink-turn related
geometric
IL_5J7L_025
IL_54177.4
IL_8ZEJ_0231/A/569:575,
1/A/880:881
No text annotation
geometric
IL_4LFB_022
IL_38186.6
IL_8ZEJ_0241/A/580:584,
1/A/757:761
tSH-tHW-tHS
geometric
IL_5J7L_027
IL_17136.7
IL_8ZEJ_0261/A/594:596,
1/A/644:645
Major groove platform
geometric
IL_8TSV_001
IL_48076.6
IL_8ZEJ_0271/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_029
IL_68140.4
IL_8ZEJ_0281/A/605:612,
1/A/628:633
No text annotation
geometric
IL_5J7L_030
IL_78349.3
IL_8ZEJ_0291/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_50694.7
IL_8ZEJ_0301/A/659:660,
1/A/745:747
Single stack bend
geometric
IL_8CRE_091
IL_26793.1
IL_8ZEJ_0311/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
geometric
IL_5J7L_033
IL_85033.2
IL_8ZEJ_0321/A/673:677,
1/A/713:717
Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_49751.4
IL_8ZEJ_0331/A/684:688,
1/A/699:706
Kink-turn
geometric
IL_5J7L_035
IL_01488.3
IL_8ZEJ_0341/A/774:778,
1/A/804:805
Left turn
geometric
IL_4LFB_032
IL_29346.2
IL_8ZEJ_0351/A/779:783,
1/A/799:803
tSH-tHW-tHS
geometric
IL_5J7L_037
IL_17136.7
IL_8ZEJ_0361/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_5J7L_038
IL_41756.4
IL_8ZEJ_0371/A/922:923,
1/A/1393:1395
Single bulged A
geometric
IL_5J7L_039
IL_31462.7
IL_8ZEJ_0381/A/925:927,
1/A/1390:1391
Single bulged G
geometric
IL_5J7L_040
IL_00225.14
IL_8ZEJ_0391/A/933:935,
1/A/1380:1384
Minor groove platform
geometric
IL_5J7L_041
IL_47078.3
IL_8ZEJ_0401/A/953:954,
1/A/1226:1228
Minor groove platform
geometric
IL_4LFB_038
IL_51454.3
IL_8ZEJ_0411/A/993:997,
1/A/1044:1045
Minor groove platform
geometric
IL_5J7L_043
IL_47078.3
IL_8ZEJ_0421/A/997:999,
1/A/1041:1044
No text annotation
geometric
IL_8CRE_069
IL_15698.3
IL_8ZEJ_0431/A/1048:1050,
1/A/1208:1209
Single bulged U
geometric
IL_5J7L_046
IL_89505.4
IL_8ZEJ_0441/A/1052:1056,
1/A/1204:1206
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_8ZEJ_0451/A/1057:1058,
1/A/1199:1203
Minor groove platform
geometric
IL_5J7L_048
IL_95583.2
IL_8ZEJ_0461/A/1060:1061,
1/A/1195:1197
Single bulged A
geometric
IL_5J7L_049
IL_31462.7
IL_8ZEJ_0471/A/1061:1063,
1/A/1193:1195
Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_8ZEJ_0481/A/1124:1128,
1/A/1144:1149
No text annotation
geometric
IL_5J7L_051
IL_06691.1
IL_8ZEJ_0491/A/1129:1132,
1/A/1142:1143
Minor groove platform
geometric
IL_3MXH_005
IL_15052.4
IL_8ZEJ_0501/A/1132:1134,
1/A/1141:1142
Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_8ZEJ_0511/A/1158:1161,
1/A/1175:1181
No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_8ZEJ_0521/A/1247:1253,
1/A/1284:1290
No text annotation
geometric
IL_5J7L_054
IL_09129.2
IL_8ZEJ_0531/A/1255:1258,
1/A/1277:1282
180 degree turn
geometric
IL_5J7L_055
IL_11344.2
IL_8ZEJ_0541/A/1259:1263,
1/A/1272:1276
Double sheared with non-canonical cWW
geometric
IL_5J7L_056
IL_17948.2
IL_8ZEJ_0551/A/1303:1308,
1/A/1329:1334
No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_8ZEJ_0561/A/1399:1401,
1/A/1501:1504
No text annotation
geometric
IL_8CRE_466
IL_61438.4
IL_8ZEJ_0571/A/1401:1404,
1/A/1497:1501
No text annotation
geometric
IL_4LFB_068
IL_65718.4
IL_8ZEJ_0581/A/1405:1407,
1/A/1494:1496
Isolated non-canonical cWW pair
geometric
IL_8CRE_468
IL_87907.2
IL_8ZEJ_0591/A/1407:1409,
1/A/1491:1494
No text annotation
geometric
IL_4LFB_070
IL_31531.3
IL_8ZEJ_0601/A/1412:1414,
1/A/1486:1488
Isolated non-canonical cWW pair
geometric
IL_5J7L_061
IL_87907.2
IL_8ZEJ_0611/A/1416:1419,
1/A/1481:1484
Double sheared
geometric
IL_5J7L_062
IL_09705.15
IL_8ZEJ_0621/A/1430:1435,
1/A/1466:1470
Triple sheared related
geometric
IL_5J7L_063
IL_80231.1
IL_8ZEJ_0631/A/1440:1442,
1/A/1460:1461
Minor groove platform
geometric
IL_6DTD_003
IL_51454.3
IL_8ZEJ_0641/A/1445:1448,
1/A/1455:1457
No text annotation
geometric
IL_5J7L_065
IL_31531.3
IL_8ZEJ_0651/a/17:18,
1/a/65:67
Major groove intercalation
geometric
IL_5J7L_355
IL_31462.7
IL_8ZEJ_0661/a/23:28,
1/a/56:60
No text annotation
IL_8ZEJ_0671/a/30:31,
1/a/51:54
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_357
IL_68140.4
IL_8ZEJ_0681/a/34:38,
1/a/44:48
Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_8ZEJ_0691/a/71:79,
1/a/97:105
Bacterial 5S Loop E
geometric
IL_5J7L_359
IL_56455.6
IL_8ZEJ_0701/b/24:30,
1/b/510:516
Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_8ZEJ_0711/b/36:37,
1/b/442:444
Single bulged A
geometric
IL_7A0S_002
IL_31462.7
IL_8ZEJ_0721/b/39:41,
1/b/438:440
Isolated cWH basepair
geometric
IL_4KTG_002
IL_10167.6
IL_8ZEJ_0731/b/43:44,
1/b/434:436
Minor groove platform
geometric
IL_5J7L_247
IL_51454.3
IL_8ZEJ_0741/b/81:85,
1/b/97:105
No text annotation
geometric
IL_5J7L_248
IL_37015.1
IL_8ZEJ_0751/b/183:184,
1/b/212:214
Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_8ZEJ_0761/b/188:194,
1/b/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
IL_04346.10
IL_8ZEJ_0771/b/239:245,
1/b/253:258
7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
IL_26307.2
IL_8ZEJ_0781/b/269:271,
1/b/366:370
No text annotation
geometric
IL_5J7L_252
IL_47972.1
IL_8ZEJ_0791/b/273:281,
1/b/359:364
No text annotation
IL_8ZEJ_0801/b/293:295,
1/b/343:347
No text annotation
geometric
IL_4WF9_014
IL_69440.3
IL_8ZEJ_0811/b/536:539,
1/b/554:557
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_8ZEJ_0821/b/564:566,
1/b/575:577
Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_8ZEJ_0831/b/591:593,
1/b/664:666
Isolated cWH basepair
geometric
IL_4KTG_002
IL_10167.6
IL_8ZEJ_0841/b/606:610,
1/b/618:622
AAA cross-strand stack
geometric
IL_5J7L_258
IL_66798.2
IL_8ZEJ_0851/b/672:674,
1/b/806:808
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_87907.2
IL_8ZEJ_0861/b/674:678,
1/b/799:806
tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_8ZEJ_0871/b/697:698,
1/b/763:765
Single bulged A
geometric
IL_4V9F_025
IL_31462.7
IL_8ZEJ_0881/b/702:703,
1/b/728:730
Single bulged G
geometric
IL_7A0S_017
IL_00225.14
IL_8ZEJ_0891/b/703:707,
1/b/724:728
Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_8ZEJ_0901/b/738:741,
1/b/756:758
No text annotation
geometric
IL_8P9A_386
IL_51387.3
IL_8ZEJ_0911/b/775:777,
1/b/787:791
Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_8ZEJ_0921/b/844:848,
1/b/930:934
No text annotation
IL_8ZEJ_0931/b/850:851,
1/b/926:928
Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_8ZEJ_0941/b/856:862,
1/b/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_8ZEJ_0951/b/862:863,
1/b/913:915
Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_8ZEJ_0961/b/864:868,
1/b/909:912
C-loop with bulged stacked A's
geometric
IL_5J7L_272
IL_26222.2
IL_8ZEJ_0971/b/870:872,
1/b/905:907
Isolated non-canonical cWW pair
geometric
IL_5J7L_273
IL_28037.2
IL_8ZEJ_0981/b/875:879,
1/b/898:902
No text annotation
IL_8ZEJ_0991/b/879:881,
1/b/895:898
No text annotation
IL_8ZEJ_1001/b/994:996,
1/b/1159:1160
Single bulged C
geometric
IL_5J7L_276
IL_61258.15
IL_8ZEJ_1011/b/998:1002,
1/b/1153:1157
UAA/GAN
geometric
IL_4WF9_036
IL_38507.2
IL_8ZEJ_1021/b/1004:1011,
1/b/1150:1151
SSU/LSU pseudoknot
geometric
IL_4WF9_037
IL_41203.4
IL_8ZEJ_1031/b/1011:1013,
1/b/1149:1150
Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_8ZEJ_1041/b/1018:1024,
1/b/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_8ZEJ_1051/b/1024:1030,
1/b/1124:1140
No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_8ZEJ_1061/b/1031:1034,
1/b/1121:1123
Isolated non-canonical cWW pair
geometric
IL_5J7L_282
IL_57744.1
IL_8ZEJ_1071/b/1038:1041,
1/b/1114:1117
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
IL_85033.2
IL_8ZEJ_1081/b/1196:1198,
1/b/1247:1250
Isolated cWS basepair
geometric
IL_4WF9_044
IL_42997.3
IL_8ZEJ_1091/b/1202:1206,
1/b/1240:1243
No text annotation
geometric
IL_5J7L_287
IL_91920.1
IL_8ZEJ_1101/b/1208:1215,
1/b/1234:1238
Kink-turn
geometric
IL_5J7L_288
IL_70923.9
IL_8ZEJ_1111/b/1262:1269,
1/b/2011:2017
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_289
IL_04346.10
IL_8ZEJ_1131/b/1310:1313,
1/b/1603:1604
Major groove platform; stack outside cWW
geometric
IL_4WF9_049
IL_50694.7
IL_8ZEJ_1141/b/1319:1323,
1/b/1331:1333
C-loop
geometric
IL_5J7L_291
IL_63596.11
IL_8ZEJ_1151/b/1351:1355,
1/b/1376:1380
UAA/GAN
geometric
IL_5J7L_292
IL_89021.2
IL_8ZEJ_1161/b/1357:1361,
1/b/1370:1374
tSH-tHW-tHS
geometric
IL_5J7L_293
IL_17136.7
IL_8ZEJ_1171/b/1415:1416,
1/b/1582:1587
No text annotation
geometric
IL_5J7L_294
IL_87211.1
IL_8ZEJ_1181/b/1417:1421,
1/b/1577:1581
UAA/GAN
geometric
IL_5J7L_295
IL_38507.2
IL_8ZEJ_1191/b/1432:1435,
1/b/1557:1561
tWW and non-canonical cWW
geometric
IL_4PMI_008
IL_58112.2
IL_8ZEJ_1201/b/1437:1440,
1/b/1551:1555
tSH-tHW
geometric
IL_5J7L_297
IL_99646.2
IL_8ZEJ_1211/b/1450:1451,
1/b/1459:1461
Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_8ZEJ_1221/b/1468:1471,
1/b/1520:1524
No text annotation
geometric
IL_5J7L_299
IL_68574.4
IL_8ZEJ_1231/b/1474:1478,
1/b/1513:1517
tSH-tHW-tHS
geometric
IL_5J7L_300
IL_38862.4
IL_8ZEJ_1241/b/1481:1486,
1/b/1503:1510
No text annotation
IL_8ZEJ_1261/b/1489:1491,
1/b/1499:1500
Single bulged A
geometric
IL_5J7L_302
IL_31462.7
IL_8ZEJ_1271/b/1526:1529,
1/b/1542:1546
UAA/GAN variation
geometric
IL_5J7L_303
IL_23774.1
IL_8ZEJ_1281/b/1651:1656,
1/b/2004:2006
No text annotation
geometric
IL_5J7L_304
IL_12566.4
IL_8ZEJ_1291/b/1663:1665,
1/b/1995:1997
Isolated tWW turn
geometric
IL_5J7L_305
IL_67095.2
IL_8ZEJ_1301/b/1666:1669,
1/b/1993:1994
Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_50694.7
IL_8ZEJ_1311/b/1666:1674,
1/b/1990:1994
No text annotation
geometric
IL_4WF9_117
IL_22854.4
IL_8ZEJ_1321/b/1669:1674,
1/b/1990:1993
Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_8ZEJ_1331/b/1686:1691,
1/b/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_47346.2
IL_8ZEJ_1341/b/1712:1718,
1/b/1742:1746
6x5 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_309
IL_88269.4
IL_8ZEJ_1351/b/1720:1724,
1/b/1736:1740
Triple sheared
geometric
IL_5J7L_310
IL_50730.2
IL_8ZEJ_1361/b/1727:1728,
1/b/1731:1733
Single bulged C
geometric
IL_7KGA_004
IL_61258.15
IL_8ZEJ_1371/b/1770:1771,
1/b/1980:1982
Single bulged A
geometric
IL_5J7L_312
IL_31462.7
IL_8ZEJ_1381/b/1798:1804,
1/b/1813:1821
Kink-turn related
geometric
IL_5J7L_313
IL_17069.5
IL_8ZEJ_1391/b/1837:1840,
1/b/1902:1903
Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_95583.2
IL_8ZEJ_1401/b/1841:1842,
1/b/1898:1901
Major groove intercalation
geometric
IL_4V9F_067
IL_82107.5
IL_8ZEJ_1411/b/1846:1849,
1/b/1893:1894
Major groove minor groove platform; mini C-loop
geometric
IL_5J7L_316
IL_68140.4
IL_8ZEJ_1421/b/1851:1860,
1/b/1882:1891
No text annotation
geometric
IL_5J7L_387
IL_61249.1
IL_8ZEJ_1431/b/1864:1867,
1/b/1874:1878
UAA/GAN related
geometric
IL_5J7L_317
IL_77691.5
IL_8ZEJ_1441/b/1933:1934,
1/b/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.4
IL_8ZEJ_1451/b/1934:1945,
1/b/1961:1964
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_8ZEJ_1461/b/2050:2052,
1/b/2617:2618
Major groove platform
geometric
IL_5J7L_320
IL_48076.6
IL_8ZEJ_1471/b/2054:2056,
1/b/2612:2615
No text annotation
geometric
IL_5J7L_321
IL_83389.2
IL_8ZEJ_1481/b/2067:2069,
1/b/2442:2443
Single bulged U
geometric
IL_4WF9_080
IL_89505.4
IL_8ZEJ_1491/b/2070:2071,
1/b/2438:2441
Minor groove platform
geometric
IL_4V9F_075
IL_51454.3
IL_8ZEJ_1501/b/2081:2083,
1/b/2236:2239
Isolated tHS basepair with bulges
geometric
IL_5J7L_325
IL_85599.2
IL_8ZEJ_1511/b/2085:2087,
1/b/2232:2234
Isolated non-canonical cWW pair
geometric
IL_5J7L_326
IL_28037.2
IL_8ZEJ_1521/b/2099:2101,
1/b/2189:2190
Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_8ZEJ_1531/b/2102:2110,
1/b/2179:2188
No text annotation
IL_8ZEJ_1541/b/2110:2120,
1/b/2178:2179
No text annotation
IL_8ZEJ_1551/b/2121:2123,
1/b/2175:2177
No text annotation
IL_8ZEJ_1561/b/2124:2128,
1/b/2161:2174
No text annotation
IL_8ZEJ_1571/b/2128:2129,
1/b/2159:2161
No text annotation
IL_8ZEJ_1581/b/2129:2142,
1/b/2149:2159
No text annotation
IL_8ZEJ_1591/b/2202:2204,
1/b/2220:2221
Single bulged U
geometric
IL_5J7L_331
IL_89505.4
IL_8ZEJ_1601/b/2297:2299,
1/b/2317:2321
No text annotation
geometric
IL_5J7L_332
IL_61476.2
IL_8ZEJ_1611/b/2350:2353,
1/b/2364:2367
Double sheared
geometric
IL_5J7L_333
IL_09705.15
IL_8ZEJ_1621/b/2401:2403,
1/b/2414:2415
Major groove intercalation
geometric
IL_1ET4_002
IL_89505.4
IL_8ZEJ_1631/b/2453:2454,
1/b/2498:2500
Single stack bend
geometric
IL_5J7L_391
IL_26793.1
IL_8ZEJ_1641/b/2454:2455,
1/b/2496:2498
Major groove platform
geometric
IL_5J7L_392
IL_48076.6
IL_8ZEJ_1651/b/2457:2459,
1/b/2493:2494
Major groove platform
geometric
IL_7A0S_085
IL_48076.6
IL_8ZEJ_1661/b/2459:2461,
1/b/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_7A0S_086
IL_51387.3
IL_8ZEJ_1671/b/2466:2470,
1/b/2480:2484
Double sheared with non-canonical cWW
geometric
IL_4WF9_093
IL_17948.2
IL_8ZEJ_1681/b/2507:2508,
1/b/2580:2582
Major groove platform
geometric
IL_7A0S_088
IL_07039.3
IL_8ZEJ_1691/b/2510:2512,
1/b/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
IL_07785.1
IL_8ZEJ_1701/b/2512:2513,
1/b/2571:2574
No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_8ZEJ_1711/b/2522:2523,
1/b/2540:2543
Major groove platform with intercalation
geometric
IL_5J7L_342
IL_02555.1
IL_8ZEJ_1721/b/2589:2591,
1/b/2603:2605
Isolated cWH basepair
geometric
IL_4J50_001
IL_10167.6
IL_8ZEJ_1731/b/2591:2592,
1/b/2601:2603
Single bulged A
geometric
IL_8P9A_399
IL_31462.7
IL_8ZEJ_1741/b/2592:2594,
1/b/2599:2601
Isolated cWH basepair
geometric
IL_8CRE_411
IL_10167.6
IL_8ZEJ_1751/b/2634:2636,
1/b/2782:2784
Isolated cWH basepair
geometric
IL_4WF9_045
IL_10167.6
IL_8ZEJ_1761/b/2636:2640,
1/b/2774:2782
tSH-tHS-tHW
geometric
IL_5J7L_345
IL_04638.3
IL_8ZEJ_1771/b/2652:2658,
1/b/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.4
IL_8ZEJ_1781/b/2680:2684,
1/b/2725:2727
C-loop
geometric
IL_5J7L_347
IL_63596.11
IL_8ZEJ_1791/b/2687:2691,
1/b/2718:2722
UAA/GAN related, with intercalation
geometric
IL_4WF9_102
IL_23774.1
IL_8ZEJ_1801/b/2695:2696,
1/b/2711:2714
Multiple bulged bases
geometric
IL_4WF9_103
IL_42626.2
IL_8ZEJ_1811/b/2737:2742,
1/b/2762:2767
UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_8ZEJ_1821/b/2795:2796,
1/b/2799:2801
Single bulged A
geometric
IL_9DFE_058
IL_31462.7
IL_8ZEJ_1831/b/2806:2811,
1/b/2889:2892
No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_8ZEJ_1841/b/2838:2839,
1/b/2878:2880
Major groove intercalation
geometric
IL_5J7L_352
IL_66635.5
IL_8ZEJ_1851/b/2843:2846,
1/b/2870:2874
Multiple bulged bases with non-canonical cWW
geometric
IL_5J7L_353
IL_64231.5
IL_8ZEJ_1861/b/2847:2852,
1/b/2865:2869
tHS double platform
geometric
IL_5J7L_354
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_8ZEJ_025Isolated cWH basepair
IL_8ZEJ_112Isolated cWH basepair
IL_8ZEJ_125Isolated cWH basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8ZEJ_0011/A/46:47,
1/A/361:367,
1/A/393:395
No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_8ZEJ_0021/A/46:52,
1/A/359:367,
1/A/393:395
No text annotation
geometric
J3_4LFB_014
J3_46317.4
J3_8ZEJ_0031/A/586:588,
1/A/651:654,
1/A/754:755
No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_8ZEJ_0041/A/586:588,
1/A/651:655,
1/A/751:755
No text annotation
geometric
J3_4LFB_015
J3_17385.4
J3_8ZEJ_0051/A/672:673,
1/A/717:725,
1/A/732:734
No text annotation
geometric
J3_5J7L_003
J3_11934.4
J3_8ZEJ_0061/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
geometric
J3_5J7L_004
J3_85054.4
J3_8ZEJ_0071/A/936:939,
1/A/1344:1350,
1/A/1372:1379
No text annotation
geometric
J3_5J7L_052
J3_25303.4
J3_8ZEJ_0081/A/943:946,
1/A/1235:1237,
1/A/1337:1340
No text annotation
geometric
J3_4LFB_003
J3_52655.4
J3_8ZEJ_0091/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
geometric
J3_4LFB_004
J3_83516.4
J3_8ZEJ_0101/A/990:993,
1/A/1045:1047,
1/A/1210:1215
No text annotation
J3_8ZEJ_0111/A/990:997,
1/A/1044:1047,
1/A/1210:1215
No text annotation
J3_8ZEJ_0121/A/1002:1008,
1/A/1021:1027,
1/A/1034:1038
No text annotation
J3_8ZEJ_0131/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
geometric
J3_4LFB_007
J3_08394.3
J3_8ZEJ_0141/A/1073:1074,
1/A/1083:1086,
1/A/1099:1102
No text annotation
geometric
J3_4LFB_017
J3_79369.1
J3_8ZEJ_0151/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184
No text annotation
geometric
J3_5J7L_010
J3_82365.4
J3_8ZEJ_0161/A/1116:1118,
1/A/1155:1161,
1/A/1175:1184
No text annotation
geometric
J3_4LFB_018
J3_17791.2
J3_8ZEJ_0171/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337
No text annotation
geometric
J3_4LFB_009
J3_37047.6
J3_8ZEJ_0181/a/10:16,
1/a/68:70,
1/a/106:110
No text annotation
geometric
J3_5J7L_049
J3_89095.1
J3_8ZEJ_0191/b/30:31,
1/b/474:484,
1/b/496:510
No text annotation
geometric
J3_5J7L_066
J3_92134.2
J3_8ZEJ_0201/b/32:35,
1/b/445:461,
1/b/468:473
No text annotation
geometric
J3_5J7L_067
J3_30040.2
J3_8ZEJ_0211/b/56:57,
1/b/70:76,
1/b/110:114
No text annotation
geometric
J3_5J7L_037
J3_35667.2
J3_8ZEJ_0221/b/297:301,
1/b/316:325,
1/b/337:341
No text annotation
geometric
J3_5J7L_068
J3_46299.2
J3_8ZEJ_0231/b/683:689,
1/b/773:775,
1/b/791:794
No text annotation
geometric
J3_5J7L_038
J3_64189.2
J3_8ZEJ_0241/b/698:700,
1/b/732:736,
1/b/760:763
No text annotation
geometric
J3_4WF9_003
J3_44724.7
J3_8ZEJ_0251/b/1043:1063,
1/b/1076:1092,
1/b/1099:1112
No text annotation
J3_8ZEJ_0261/b/1298:1303,
1/b/1625:1627,
1/b/1639:1642
No text annotation
geometric
J3_5J7L_041
J3_32852.6
J3_8ZEJ_0271/b/1306:1309,
1/b/1605:1611,
1/b/1620:1622
No text annotation
geometric
J3_7A0S_007
J3_71677.1
J3_8ZEJ_0281/b/1344:1350,
1/b/1381:1385,
1/b/1402:1403
No text annotation
J3_8ZEJ_0291/b/1424:1429,
1/b/1564:1565,
1/b/1568:1574
No text annotation
geometric
J3_7A0S_019
J3_34864.2
J3_8ZEJ_0301/b/2091:2093,
1/b/2196:2200,
1/b/2223:2228
Kink-turn 3-way junction
geometric
J3_5J7L_044
J3_89368.5
J3_8ZEJ_0311/b/2295:2297,
1/b/2321:2323,
1/b/2332:2337
No text annotation
geometric
J3_5J7L_045
J3_61124.2
J3_8ZEJ_0321/b/2295:2299,
1/b/2317:2323,
1/b/2332:2337
No text annotation
geometric
J3_5J7L_071
J3_44961.1
J3_8ZEJ_0331/b/2517:2520,
1/b/2545:2547,
1/b/2561:2567
No text annotation
geometric
J3_5J7L_046
J3_32601.5
J3_8ZEJ_0341/b/2789:2791,
1/b/2805:2806,
1/b/2892:2894
No text annotation
J3_8ZEJ_0351/b/2812:2815,
1/b/2831:2836,
1/b/2882:2888
No text annotation
J4_8ZEJ_0011/A/115:122,
1/A/239:240,
1/A/286:289,
1/A/311:312
No text annotation
J4_8ZEJ_0021/A/142:144,
1/A/178:184,
1/A/193:198,
1/A/219:221
No text annotation
J4_8ZEJ_0031/A/575:577,
1/A/764:769,
1/A/810:821,
1/A/879:880
No text annotation
J4_8ZEJ_0041/X/3:10,
1/X/25:27,
1/X/43:49,
1/X/65:70
No text annotation
J4_8ZEJ_0051/Y/4:10,
1/Y/26:28,
1/Y/44:53,
1/Y/63:70
No text annotation
J4_8ZEJ_0061/Z/5:10,
1/Z/26:28,
1/Z/44:52,
1/Z/64:69
No text annotation
J4_8ZEJ_0071/b/268:269,
1/b/370:375,
1/b/399:406,
1/b/421:424
No text annotation
J4_8ZEJ_0081/b/297:301,
1/b/316:319,
1/b/323:325,
1/b/337:341
No text annotation
J4_8ZEJ_0091/b/601:604,
1/b/624:628,
1/b/635:638,
1/b/650:656
No text annotation
J4_8ZEJ_0101/b/1270:1276,
1/b/1294:1295,
1/b/1645:1648,
1/b/2009:2010
No text annotation
J4_8ZEJ_0111/b/1310:1314,
1/b/1338:1343,
1/b/1404:1405,
1/b/1597:1604
No text annotation
J4_8ZEJ_0121/b/1313:1314,
1/b/1338:1343,
1/b/1404:1405,
1/b/1597:1603
No text annotation
J4_8ZEJ_0131/b/1444:1445,
1/b/1466:1467,
1/b/1525:1526,
1/b/1546:1547
No text annotation
J4_8ZEJ_0141/b/1772:1776,
1/b/1788:1792,
1/b/1827:1830,
1/b/1975:1979
No text annotation
J4_8ZEJ_0151/b/1833:1835,
1/b/1905:1906,
1/b/1924:1933,
1/b/1967:1972
No text annotation
J4_8ZEJ_0161/b/2285:2289,
1/b/2343:2347,
1/b/2370:2372,
1/b/2381:2383
No text annotation
J4_8ZEJ_0171/b/2643:2646,
1/b/2674:2676,
1/b/2731:2735,
1/b/2769:2771
No text annotation
J5_8ZEJ_0011/A/36:39,
1/A/403:406,
1/A/436:440,
1/A/497:500,
1/A/545:548
No text annotation
J5_8ZEJ_0021/A/36:39,
1/A/403:406,
1/A/436:442,
1/A/492:500,
1/A/545:548
No text annotation
J5_8ZEJ_0031/A/58:61,
1/A/106:113,
1/A/314:316,
1/A/337:339,
1/A/350:354
No text annotation
J5_8ZEJ_0041/b/47:54,
1/b/116:121,
1/b/130:131,
1/b/148:150,
1/b/176:178
No text annotation
J5_8ZEJ_0051/b/531:533,
1/b/560:564,
1/b/577:579,
1/b/1261:1262,
1/b/2017:2018
No text annotation
J5_8ZEJ_0061/b/584:589,
1/b/668:671,
1/b/809:812,
1/b/1195:1196,
1/b/1250:1256
No text annotation
J5_8ZEJ_0071/b/1674:1682,
1/b/1706:1707,
1/b/1751:1752,
1/b/1756:1764,
1/b/1988:1990
No text annotation
J5_8ZEJ_0081/b/2057:2064,
1/b/2446:2453,
1/b/2500:2507,
1/b/2582:2588,
1/b/2606:2611
No text annotation
J6_8ZEJ_0011/b/45:46,
1/b/179:183,
1/b/214:224,
1/b/231:235,
1/b/262:266,
1/b/426:433
No text annotation
J6_8ZEJ_0021/b/2074:2077,
1/b/2243:2246,
1/b/2258:2259,
1/b/2281:2284,
1/b/2384:2395,
1/b/2421:2435
No text annotation
J7_8ZEJ_0011/b/8:15,
1/b/525:531,
1/b/2018:2023,
1/b/2040:2043,
1/b/2625:2630,
1/b/2788:2789,
1/b/2894:2895
No text annotation
J7_8ZEJ_0021/b/817:822,
1/b/835:838,
1/b/940:946,
1/b/971:976,
1/b/987:991,
1/b/1163:1164,
1/b/1185:1190
No text annotation

Problematic loops

No problematic loops


Coloring options:
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