HL_8ZEJ_036

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

8ZEJ|1|X|C|56, 8ZEJ|1|X|G|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_036 not in the Motif Atlas

Geometric match to HL_8K1E_002

Geometric discrepancy: 0.1921

The information below is about HL_8K1E_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8ZEJ|1|X|G|53
8ZEJ|1|X|U|54
8ZEJ|1|X|U|55
8ZEJ|1|X|C|56
8ZEJ|1|X|G|57
8ZEJ|1|X|A|58
8ZEJ|1|X|G|59
8ZEJ|1|X|U|60
8ZEJ|1|X|C|61

Current chains

Chain X

E-site tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA