HL_8ZEJ_038
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- GUUCGGGAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZEJ_038 not in the Motif Atlas
- Geometric match to HL_6UFG_007
- Geometric discrepancy: 0.1236
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8ZEJ|1|Y|G|32
8ZEJ|1|Y|U|33
8ZEJ|1|Y|U|34
8ZEJ|1|Y|C|35
8ZEJ|1|Y|G|36
8ZEJ|1|Y|G|37
8ZEJ|1|Y|G|38
8ZEJ|1|Y|A|39
8ZEJ|1|Y|C|40
Current chains
- Chain Y
- P-site tRNA (Chain Y), A-site tRNA-PRO (Chain Z)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S ribosomal protein S9
- Chain X
- Transfer RNA; tRNA
- Chain x
- mRNA
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